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L'installation de numpy de Python continue d'échouer

Demandé el 4 de Juin, 2015
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J'essaie d'installer numpy mais l'installation échoue pour une raison quelconque.
En fait, ce dont j'ai besoin, c'est de l'outil Python ne pas apprendre mais numpy (et scipy) sont des dépendances.

Alors j'ai couru :

sudo pip install numpy

Mais cela échoue avec le journal d'installation :

Downloading/unpacking numpy
  Running setup.py (path:/tmp/pip_build_root/numpy/setup.py) egg_info for package numpy
    Running from numpy source directory.

    warning: no previously-included files matching '*.pyc' found anywhere in distribution
    warning: no previously-included files matching '*.pyo' found anywhere in distribution
    warning: no previously-included files matching '*.pyd' found anywhere in distribution
Installing collected packages: numpy
  Running setup.py install for numpy
    /bin/sh: 1: svnversion: not found
    non-existing path in 'numpy/distutils': 'site.cfg'
    non-existing path in 'numpy/f2py': 'docs'
    non-existing path in 'numpy/f2py': 'f2py.1'
    F2PY Version 2
    blas_opt_info:
    blas_mkl_info:
      libraries mkl,vml,guide not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
      NOT AVAILABLE

    openblas_info:
      FOUND:
        libraries = ['openblas']
        language = f77
        library_dirs = ['/usr/lib']

      FOUND:
        libraries = ['openblas']
        language = f77
        library_dirs = ['/usr/lib']

    /bin/sh: 1: svnversion: not found
    non-existing path in 'numpy/lib': 'benchmarks'
    lapack_opt_info:
    openblas_lapack_info:
    C compiler: cc

    compile options: '-c'
    cc: /tmp/tmpazdxtcf1/source.c
    cc /tmp/tmpazdxtcf1/tmp/tmpazdxtcf1/source.o -lopenblas -o /tmp/tmpazdxtcf1/a.out
      FOUND:
        libraries = ['openblas']
        language = f77
        library_dirs = ['/usr/lib']

      FOUND:
        libraries = ['openblas']
        language = f77
        library_dirs = ['/usr/lib']

    unifing config_cc, config, build_clib, build_ext, build commands --compiler options
    unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
    build_src
    building py_modules sources
    building library "npymath" sources
    customize Gnu95FCompiler
    Found executable /usr/bin/gfortran
    customize Gnu95FCompiler
    customize Gnu95FCompiler using config
    C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC

    compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/include -I/usr/include/python3.4m -c'
    x86_64-linux-gnu-gcc: _configtest.c
    x86_64-linux-gnu-gcc -pthread _configtest.o -o _configtest
    success!
    removing: _configtest.c _configtest.o _configtest
    C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC

    compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/include -I/usr/include/python3.4m -c'
    x86_64-linux-gnu-gcc: _configtest.c
    _configtest.c:1:5: warning: conflicting types for built-in function ‘exp’
     int exp (void);
         ^
    x86_64-linux-gnu-gcc -pthread _configtest.o -o _configtest
    _configtest.o: In function `main':
    /tmp/pip_build_root/numpy/_configtest.c:6: undefined reference to `exp'
    collect2: error: ld returned 1 exit status
    _configtest.o: In function `main':
    /tmp/pip_build_root/numpy/_configtest.c:6: undefined reference to `exp'
    collect2: error: ld returned 1 exit status
    failure.
    removing: _configtest.c _configtest.o
    C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC

    compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/include -I/usr/include/python3.4m -c'
    x86_64-linux-gnu-gcc: _configtest.c
    _configtest.c:1:5: warning: conflicting types for built-in function ‘exp’
     int exp (void);
         ^
    x86_64-linux-gnu-gcc -pthread _configtest.o -lm -o _configtest
    success!
    removing: _configtest.c _configtest.o _configtest
    conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npymath/npy_math.c
    conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npymath/ieee754.c
    conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npymath/npy_math_complex.c
    building library "npysort" sources
    conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npysort/quicksort.c
    conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npysort/mergesort.c
    conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npysort/heapsort.c
    conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/private/npy_partition.h
      adding 'build/src.linux-x86_64-3.4/numpy/core/src/private' to include_dirs.
    conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npysort/selection.c
    conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/private/npy_binsearch.h
    conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npysort/binsearch.c
    None - nothing done with h_files = ['build/src.linux-x86_64-3.4/numpy/core/src/private/npy_partition.h', 'build/src.linux-x86_64-3.4/numpy/core/src/private/npy_binsearch.h']
    building extension "numpy.core._dummy" sources
    Generating build/src.linux-x86_64-3.4/numpy/core/include/numpy/config.h
    C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC

    compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/include -I/usr/include/python3.4m -c'
    x86_64-linux-gnu-gcc: _configtest.c
    _configtest.c:1:20: fatal error: Python.h: No such file or directory
     #include <Python.h>
                        ^
    compilation terminated.
    _configtest.c:1:20: fatal error: Python.h: No such file or directory
     #include <Python.h>
                        ^
    compilation terminated.
    failure.
    removing: _configtest.c _configtest.o
    Running from numpy source directory.
    /usr/lib/python3.4/distutils/dist.py:260: UserWarning: Unknown distribution option: 'define_macros'
      warnings.warn(msg)
    Traceback (most recent call last):
      File "<string>", line 1, in <module>
      File "/tmp/pip_build_root/numpy/setup.py", line 251, in <module>
        setup_package()
      File "/tmp/pip_build_root/numpy/setup.py", line 243, in setup_package
        setup(**metadata)
      File "/tmp/pip_build_root/numpy/numpy/distutils/core.py", line 169, in setup
        return old_setup(**new_attr)
      File "/usr/lib/python3.4/distutils/core.py", line 148, in setup
        dist.run_commands()
      File "/usr/lib/python3.4/distutils/dist.py", line 955, in run_commands
        self.run_command(cmd)
      File "/usr/lib/python3.4/distutils/dist.py", line 974, in run_command
        cmd_obj.run()
      File "/tmp/pip_build_root/numpy/numpy/distutils/command/install.py", line 62, in run
        r = self.setuptools_run()
      File "/tmp/pip_build_root/numpy/numpy/distutils/command/install.py", line 36, in setuptools_run
        return distutils_install.run(self)
      File "/usr/lib/python3.4/distutils/command/install.py", line 583, in run
        self.run_command('build')
      File "/usr/lib/python3.4/distutils/cmd.py", line 313, in run_command
        self.distribution.run_command(command)
      File "/usr/lib/python3.4/distutils/dist.py", line 974, in run_command
        cmd_obj.run()
      File "/tmp/pip_build_root/numpy/numpy/distutils/command/build.py", line 39, in run
        old_build.run(self)
      File "/usr/lib/python3.4/distutils/command/build.py", line 126, in run
        self.run_command(cmd_name)
      File "/usr/lib/python3.4/distutils/cmd.py", line 313, in run_command
        self.distribution.run_command(command)
      File "/usr/lib/python3.4/distutils/dist.py", line 974, in run_command
        cmd_obj.run()
      File "/tmp/pip_build_root/numpy/numpy/distutils/command/build_src.py", line 153, in run
        self.build_sources()
      File "/tmp/pip_build_root/numpy/numpy/distutils/command/build_src.py", line 170, in build_sources
        self.build_extension_sources(ext)
      File "/tmp/pip_build_root/numpy/numpy/distutils/command/build_src.py", line 329, in build_extension_sources
        sources = self.generate_sources(sources, ext)
      File "/tmp/pip_build_root/numpy/numpy/distutils/command/build_src.py", line 386, in generate_sources
        source = func(extension, build_dir)
      File "numpy/core/setup.py", line 432, in generate_config_h
        moredefs, ignored = cocache.check_types(config_cmd, ext, build_dir)
      File "numpy/core/setup.py", line 42, in check_types
        out = check_types(*a, **kw)
      File "numpy/core/setup.py", line 293, in check_types
        "Cannot compile 'Python.h'. Perhaps you need to "\
    SystemError: Cannot compile 'Python.h'. Perhaps you need to install python-dev|python-devel.
    Complete output from command /usr/bin/python3.4 -c "import setuptools, tokenize;__file__='/tmp/pip_build_root/numpy/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-lsbot4u_-record/install-record.txt --single-version-externally-managed --compile:
    /bin/sh: 1: svnversion: not found

non-existing path in 'numpy/distutils': 'site.cfg'

non-existing path in 'numpy/f2py': 'docs'

non-existing path in 'numpy/f2py': 'f2py.1'

F2PY Version 2

blas_opt_info:

blas_mkl_info:

  libraries mkl,vml,guide not found in ['/usr/local/lib', '/usr/lib', '/usr/lib/x86_64-linux-gnu']

  NOT AVAILABLE

openblas_info:

  FOUND:

    libraries = ['openblas']

    language = f77

    library_dirs = ['/usr/lib']

  FOUND:

    libraries = ['openblas']

    language = f77

    library_dirs = ['/usr/lib']

/bin/sh: 1: svnversion: not found

non-existing path in 'numpy/lib': 'benchmarks'

lapack_opt_info:

openblas_lapack_info:

C compiler: cc

creating /tmp/tmpazdxtcf1/tmp

creating /tmp/tmpazdxtcf1/tmp/tmpazdxtcf1

compile options: '-c'

cc: /tmp/tmpazdxtcf1/source.c

cc /tmp/tmpazdxtcf1/tmp/tmpazdxtcf1/source.o -lopenblas -o /tmp/tmpazdxtcf1/a.out

  FOUND:

    libraries = ['openblas']

    language = f77

    library_dirs = ['/usr/lib']

  FOUND:

    libraries = ['openblas']

    language = f77

    library_dirs = ['/usr/lib']

running install

running build

running config_cc

unifing config_cc, config, build_clib, build_ext, build commands --compiler options

running config_fc

unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options

running build_src

build_src

building py_modules sources

creating build

creating build/src.linux-x86_64-3.4

creating build/src.linux-x86_64-3.4/numpy

creating build/src.linux-x86_64-3.4/numpy/distutils

building library "npymath" sources

customize Gnu95FCompiler

Found executable /usr/bin/gfortran

customize Gnu95FCompiler

customize Gnu95FCompiler using config

C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC

compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/include -I/usr/include/python3.4m -c'

x86_64-linux-gnu-gcc: _configtest.c

x86_64-linux-gnu-gcc -pthread _configtest.o -o _configtest

success!

removing: _configtest.c _configtest.o _configtest

C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC

compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/include -I/usr/include/python3.4m -c'

x86_64-linux-gnu-gcc: _configtest.c

_configtest.c:1:5: warning: conflicting types for built-in function ‘exp’

 int exp (void);

     ^

x86_64-linux-gnu-gcc -pthread _configtest.o -o _configtest

_configtest.o: In function `main':

/tmp/pip_build_root/numpy/_configtest.c:6: undefined reference to `exp'

collect2: error: ld returned 1 exit status

_configtest.o: In function `main':

/tmp/pip_build_root/numpy/_configtest.c:6: undefined reference to `exp'

collect2: error: ld returned 1 exit status

failure.

removing: _configtest.c _configtest.o

C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC

compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/include -I/usr/include/python3.4m -c'

x86_64-linux-gnu-gcc: _configtest.c

_configtest.c:1:5: warning: conflicting types for built-in function ‘exp’

 int exp (void);

     ^

x86_64-linux-gnu-gcc -pthread _configtest.o -lm -o _configtest

success!

removing: _configtest.c _configtest.o _configtest

creating build/src.linux-x86_64-3.4/numpy/core

creating build/src.linux-x86_64-3.4/numpy/core/src

creating build/src.linux-x86_64-3.4/numpy/core/src/npymath

conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npymath/npy_math.c

conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npymath/ieee754.c

conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npymath/npy_math_complex.c

building library "npysort" sources

creating build/src.linux-x86_64-3.4/numpy/core/src/npysort

conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npysort/quicksort.c

conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npysort/mergesort.c

conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npysort/heapsort.c

creating build/src.linux-x86_64-3.4/numpy/core/src/private

conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/private/npy_partition.h

  adding 'build/src.linux-x86_64-3.4/numpy/core/src/private' to include_dirs.

conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npysort/selection.c

conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/private/npy_binsearch.h

conv_template:> build/src.linux-x86_64-3.4/numpy/core/src/npysort/binsearch.c

None - nothing done with h_files = ['build/src.linux-x86_64-3.4/numpy/core/src/private/npy_partition.h', 'build/src.linux-x86_64-3.4/numpy/core/src/private/npy_binsearch.h']

building extension "numpy.core._dummy" sources

Generating build/src.linux-x86_64-3.4/numpy/core/include/numpy/config.h

C compiler: x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC

compile options: '-Inumpy/core/src/private -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -Inumpy/core/include -I/usr/include/python3.4m -c'

x86_64-linux-gnu-gcc: _configtest.c

_configtest.c:1:20: fatal error: Python.h: No such file or directory

 #include <Python.h>

                    ^

compilation terminated.

_configtest.c:1:20: fatal error: Python.h: No such file or directory

 #include <Python.h>

                    ^

compilation terminated.

failure.

removing: _configtest.c _configtest.o

Running from numpy source directory.

/usr/lib/python3.4/distutils/dist.py:260: UserWarning: Unknown distribution option: 'define_macros'

  warnings.warn(msg)

Traceback (most recent call last):

  File "<string>", line 1, in <module>

  File "/tmp/pip_build_root/numpy/setup.py", line 251, in <module>

    setup_package()

  File "/tmp/pip_build_root/numpy/setup.py", line 243, in setup_package

    setup(**metadata)

  File "/tmp/pip_build_root/numpy/numpy/distutils/core.py", line 169, in setup

    return old_setup(**new_attr)

  File "/usr/lib/python3.4/distutils/core.py", line 148, in setup

    dist.run_commands()

  File "/usr/lib/python3.4/distutils/dist.py", line 955, in run_commands

    self.run_command(cmd)

  File "/usr/lib/python3.4/distutils/dist.py", line 974, in run_command

    cmd_obj.run()

  File "/tmp/pip_build_root/numpy/numpy/distutils/command/install.py", line 62, in run

    r = self.setuptools_run()

  File "/tmp/pip_build_root/numpy/numpy/distutils/command/install.py", line 36, in setuptools_run

    return distutils_install.run(self)

  File "/usr/lib/python3.4/distutils/command/install.py", line 583, in run

    self.run_command('build')

  File "/usr/lib/python3.4/distutils/cmd.py", line 313, in run_command

    self.distribution.run_command(command)

  File "/usr/lib/python3.4/distutils/dist.py", line 974, in run_command

    cmd_obj.run()

  File "/tmp/pip_build_root/numpy/numpy/distutils/command/build.py", line 39, in run

    old_build.run(self)

  File "/usr/lib/python3.4/distutils/command/build.py", line 126, in run

    self.run_command(cmd_name)

  File "/usr/lib/python3.4/distutils/cmd.py", line 313, in run_command

    self.distribution.run_command(command)

  File "/usr/lib/python3.4/distutils/dist.py", line 974, in run_command

    cmd_obj.run()

  File "/tmp/pip_build_root/numpy/numpy/distutils/command/build_src.py", line 153, in run

    self.build_sources()

  File "/tmp/pip_build_root/numpy/numpy/distutils/command/build_src.py", line 170, in build_sources

    self.build_extension_sources(ext)

  File "/tmp/pip_build_root/numpy/numpy/distutils/command/build_src.py", line 329, in build_extension_sources

    sources = self.generate_sources(sources, ext)

  File "/tmp/pip_build_root/numpy/numpy/distutils/command/build_src.py", line 386, in generate_sources

    source = func(extension, build_dir)

  File "numpy/core/setup.py", line 432, in generate_config_h

    moredefs, ignored = cocache.check_types(config_cmd, ext, build_dir)

  File "numpy/core/setup.py", line 42, in check_types

    out = check_types(*a, **kw)

  File "numpy/core/setup.py", line 293, in check_types

    "Cannot compile 'Python.h'. Perhaps you need to "\

SystemError: Cannot compile 'Python.h'. Perhaps you need to install python-dev|python-devel.

----------------------------------------
Cleaning up...
Command /usr/bin/python3.4 -c "import setuptools, tokenize;__file__='/tmp/pip_build_root/numpy/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-lsbot4u_-record/install-record.txt --single-version-externally-managed --compile failed with error code 1 in /tmp/pip_build_root/numpy
Storing debug log for failure in /home/mikel/.pip/pip.log

Il y est dit Perhaps you need to install python-dev|python-devel mais ce n'est pas le cas. Lorsque j'essaie d'installer Python-dev, le message suivant apparaît :

python-dev is already the newest version.

Je pense que la source du problème est l'avertissement :

_configtest.c:1:5: warning: conflicting types for built-in function ‘exp’
 int exp (void);

Mais je n'ai aucune idée de la façon d'aborder cette question.

Demandé el 4 de Juin, 2015 par user3717551

Réponse

Trop de publicités?

3voto

Elder Geek avatar
Elder Geek Points 34144

Seule l'ancienne version peut être installée avec pip. Vous pouvez souhaiter installer la dernière version avec git.

La version courte est :

sudo apt-get install python3.4-dev
git clone git@github.com:dnouri/nolearn.git
cd nolearn
pip install -r requirements.txt
python setup.py develop

Cette installation devrait inclure toutes les exigences.

Vous avez également besoin du paquetage de développement Python 3.4.

Sources :

https://github.com/dnouri/nolearn

https://stackoverflow.com/questions/24892810/Python-3-4-and-2-7-cannot-install-numpy-package-for-Python-3-4

Répondu el 4 de Juin, 2015 par Elder Geek (34144 Points )

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