Je veux exécuter un script qui commence par
library(dplyr)
library(lubridate)
library(ggplot2) J'ai commencé avec des r-base-core y r-cran-lubridate installé. Je l'ai :
Error in mutate_impl(.data, dots) :
Evaluation error: `as_dictionary()` is defunct as of rlang 0.3.0.
Please use `as_data_pronoun()` instead.(le code lui-même n'utilise pas mutate_impl il semble que ce soit ce problème https://github.com/r-lib/rlang/issues/674 ce qui suggère une mise à jour de dplyr
r version a été R version 3.4.4 (2018-03-15) pour dplyr, je ne savais pas comment le découvrir.
J'ai donc modifié la source comme décrit ailleurs : ajouté deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ a /etc/apt/sources.list
sudo apt-get update
sudo apt-get install r-base
sudo apt-get install r-cran-dplyr
Reading package lists... Done
Building dependency tree
Reading state information... Done
Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming.
The following information may help to resolve the situation:
The following packages have unmet dependencies:
r-cran-dplyr : Depends: r-api-3.4
Depends: r-cran-assertthat but it is not going to be installed
Depends: r-cran-bindrcpp (>= 0.2) but it is not going to be installed
Depends: r-cran-glue (>= 1.1.1) but it is not going to be installed
Depends: r-cran-magrittr but it is not going to be installed
Depends: r-cran-pkgconfig but it is not going to be installed
Depends: r-cran-rlang (>= 0.1.2) but it is not going to be installed
Depends: r-cran-r6 but it is not going to be installed
Depends: r-cran-rcpp (>= 0.12.7) but it is not going to be installed
Depends: r-cran-tibble (>= 1.3.1) but it is not going to be installed
E: Unable to correct problems, you have held broken packages.J'ai couru
sudo apt-get remove r-*
sudo apt-get clean
sudo apt-get autoclean
sudo apt-get update
sudo apt-get install r-base
sudo apt-get install r-cran-dplyrmais rien n'a changé.
L'installer depuis le Shell de R ne fonctionne pas non plus :
> install.packages("dplyr")
Installing package into ‘/home/_/R/x86_64-pc-linux-gnu-library/3.5’
(as ‘lib’ is unspecified)
also installing the dependencies ‘pillar’, ‘purrr’, ‘bindrcpp’, ‘tibble’, ‘tidyselect’
trying URL 'https://cloud.r-project.org/src/contrib/pillar_1.3.0.tar.gz'...
downloaded 100 KB
trying URL 'https://cloud.r-project.org/src/contrib/purrr_0.2.5.tar.gz'...
downloaded 123 KB
trying URL 'https://cloud.r-project.org/src/contrib/bindrcpp_0.2.2.tar.gz'...
downloaded 10212 bytes
trying URL 'https://cloud.r-project.org/src/contrib/tibble_1.4.2.tar.gz'...
downloaded 107 KB
trying URL 'https://cloud.r-project.org/src/contrib/tidyselect_0.2.5.tar.gz'...
downloaded 21 KB
trying URL 'https://cloud.r-project.org/src/contrib/dplyr_0.7.8.tar.gz'...
downloaded 702 KB
* installing *source* package ‘pillar’ ...
** package ‘pillar’ successfully unpacked and MD5 sums checked
** R
** byte-compile and prepare package for lazy loading
Error : package ‘rlang’ was installed by an R version with different internals; it needs to be reinstalled for use with this R version
ERROR: lazy loading failed for package ‘pillar’
* removing ‘/home/_/R/x86_64-pc-linux-gnu-library/3.5/pillar’
* installing *source* package ‘bindrcpp’ ...
** package ‘bindrcpp’ successfully unpacked and MD5 sums checked
** libs
g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I. -I"/home/_/R/x86_64-pc-linux-gnu-library/3.5/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-oUvOgu/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o
g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I. -I"/home/_/R/x86_64-pc-linux-gnu-library/3.5/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-oUvOgu/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c create.cpp -o create.o
g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I. -I"/home/_/R/x86_64-pc-linux-gnu-library/3.5/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-oUvOgu/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c plogr.cpp -o plogr.o
g++ -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I. -I"/home/_/R/x86_64-pc-linux-gnu-library/3.5/plogr/include" -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-oUvOgu/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c test.cpp -o test.o
g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o bindrcpp.so RcppExports.o create.o plogr.o test.o -L/usr/lib/R/lib -lR
installing to /home/t/R/x86_64-pc-linux-gnu-library/3.5/bindrcpp/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Error : package ‘Rcpp’ was installed by an R version with different internals; it needs to be reinstalled for use with this R version
ERROR: lazy loading failed for package ‘bindrcpp’
* removing ‘/home/_/R/x86_64-pc-linux-gnu-library/3.5/bindrcpp’
ERROR: dependency ‘pillar’ is not available for package ‘tibble’
* removing ‘/home/_/R/x86_64-pc-linux-gnu-library/3.5/tibble’
ERROR: dependency ‘tibble’ is not available for package ‘purrr’
* removing ‘/home/_/R/x86_64-pc-linux-gnu-library/3.5/purrr’
ERROR: dependency ‘purrr’ is not available for package ‘tidyselect’
* removing ‘/home/_/R/x86_64-pc-linux-gnu-library/3.5/tidyselect’
ERROR: dependencies ‘bindrcpp’, ‘tibble’, ‘tidyselect’ are not available for package ‘dplyr’
* removing ‘/home/_/R/x86_64-pc-linux-gnu-library/3.5/dplyr’
The downloaded source packages are in
‘/tmp/Rtmpxim56P/downloaded_packages’
Warning messages:
1: In install.packages("dplyr") :
installation of package ‘pillar’ had non-zero exit status
2: In install.packages("dplyr") :
installation of package ‘bindrcpp’ had non-zero exit status
3: In install.packages("dplyr") :
installation of package ‘tibble’ had non-zero exit status
4: In install.packages("dplyr") :
installation of package ‘purrr’ had non-zero exit status
5: In install.packages("dplyr") :
installation of package ‘tidyselect’ had non-zero exit status
6: In install.packages("dplyr") :
installation of package ‘dplyr’ had non-zero exit status
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